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How to overide numpy ufunc with __array_ufunc__


How to merge two dictionaries in a single expression?How do I check if a list is empty?How do I check whether a file exists without exceptions?How can I safely create a nested directory?How to get the current time in PythonHow can I make a time delay in Python?How do I sort a dictionary by value?How to make a chain of function decorators?How to make a flat list out of list of listsHow do I list all files of a directory?






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;








0















I'm trying to implement numpy's ufunc to work with a class, using the __array_ufunc__ method introduced in numpy v1.13.



To simplify, here's what the class could look like :



class toto():
def __init__(self, value, name):
self.value = value
self.name = name
def __add__(self, other):
"""add values and concatenate names"""
return toto(self.value + other.value, self.name + other.name)
def __sub__(self, other):
"""sub values and concatenate names"""
return toto(self.value - other.value, self.name + other.name)

tata = toto(5, "first")
titi = toto(1, "second")


Now if I try to apply np.add between these two, I get the expected result, as np.add relies on add. But if I call say np.exp, I get an error as expected :



>>> np.exp(tata)
AttributeError: 'toto' object has no attribute 'exp'


Now what I would like to do is to "override" all numpy ufuncs to work smoothly with this class without having to redefine every methods (exp(self), log(self), ...) in the class.



I was planning to use numpy ufunc's [__array_ufunc__]1 to do this, but I don't really understand the doc as it doesn't provide a simple exemple of implementation.



If anyone has had any experience with this new functionnality that looks promising, could you provide a simple example ?










share|improve this question






























    0















    I'm trying to implement numpy's ufunc to work with a class, using the __array_ufunc__ method introduced in numpy v1.13.



    To simplify, here's what the class could look like :



    class toto():
    def __init__(self, value, name):
    self.value = value
    self.name = name
    def __add__(self, other):
    """add values and concatenate names"""
    return toto(self.value + other.value, self.name + other.name)
    def __sub__(self, other):
    """sub values and concatenate names"""
    return toto(self.value - other.value, self.name + other.name)

    tata = toto(5, "first")
    titi = toto(1, "second")


    Now if I try to apply np.add between these two, I get the expected result, as np.add relies on add. But if I call say np.exp, I get an error as expected :



    >>> np.exp(tata)
    AttributeError: 'toto' object has no attribute 'exp'


    Now what I would like to do is to "override" all numpy ufuncs to work smoothly with this class without having to redefine every methods (exp(self), log(self), ...) in the class.



    I was planning to use numpy ufunc's [__array_ufunc__]1 to do this, but I don't really understand the doc as it doesn't provide a simple exemple of implementation.



    If anyone has had any experience with this new functionnality that looks promising, could you provide a simple example ?










    share|improve this question


























      0












      0








      0








      I'm trying to implement numpy's ufunc to work with a class, using the __array_ufunc__ method introduced in numpy v1.13.



      To simplify, here's what the class could look like :



      class toto():
      def __init__(self, value, name):
      self.value = value
      self.name = name
      def __add__(self, other):
      """add values and concatenate names"""
      return toto(self.value + other.value, self.name + other.name)
      def __sub__(self, other):
      """sub values and concatenate names"""
      return toto(self.value - other.value, self.name + other.name)

      tata = toto(5, "first")
      titi = toto(1, "second")


      Now if I try to apply np.add between these two, I get the expected result, as np.add relies on add. But if I call say np.exp, I get an error as expected :



      >>> np.exp(tata)
      AttributeError: 'toto' object has no attribute 'exp'


      Now what I would like to do is to "override" all numpy ufuncs to work smoothly with this class without having to redefine every methods (exp(self), log(self), ...) in the class.



      I was planning to use numpy ufunc's [__array_ufunc__]1 to do this, but I don't really understand the doc as it doesn't provide a simple exemple of implementation.



      If anyone has had any experience with this new functionnality that looks promising, could you provide a simple example ?










      share|improve this question














      I'm trying to implement numpy's ufunc to work with a class, using the __array_ufunc__ method introduced in numpy v1.13.



      To simplify, here's what the class could look like :



      class toto():
      def __init__(self, value, name):
      self.value = value
      self.name = name
      def __add__(self, other):
      """add values and concatenate names"""
      return toto(self.value + other.value, self.name + other.name)
      def __sub__(self, other):
      """sub values and concatenate names"""
      return toto(self.value - other.value, self.name + other.name)

      tata = toto(5, "first")
      titi = toto(1, "second")


      Now if I try to apply np.add between these two, I get the expected result, as np.add relies on add. But if I call say np.exp, I get an error as expected :



      >>> np.exp(tata)
      AttributeError: 'toto' object has no attribute 'exp'


      Now what I would like to do is to "override" all numpy ufuncs to work smoothly with this class without having to redefine every methods (exp(self), log(self), ...) in the class.



      I was planning to use numpy ufunc's [__array_ufunc__]1 to do this, but I don't really understand the doc as it doesn't provide a simple exemple of implementation.



      If anyone has had any experience with this new functionnality that looks promising, could you provide a simple example ?







      python numpy numpy-ufunc






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Mar 27 at 21:18









      mocquinmocquin

      205 bronze badges




      205 bronze badges

























          1 Answer
          1






          active

          oldest

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          0















          If I extend your class with a __array_ufunc__ method (and __repr__):



          class toto():
          def __init__(self, value, name):
          self.value = value
          self.name = name
          def __add__(self, other):
          """add values and concatenate names"""
          return toto(self.value + other.value, self.name + other.name)
          def __sub__(self, other):
          """sub values and concatenate names"""
          return toto(self.value - other.value, self.name + other.name)

          def __repr__(self):
          return f"toto: self.value, self.name"
          def __array_ufunc__(self, *args, **kwargs):
          print(args)
          print(kwargs)


          And try some ufunc calls:



          In [458]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          In [459]: np.exp.reduce(tata)
          (<ufunc 'exp'>, 'reduce', toto: 5, first)

          In [460]: np.multiply.reduce(tata)
          (<ufunc 'multiply'>, 'reduce', toto: 5, first)

          In [461]: np.exp.reduce(tata,axes=(1,2))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2)
          In [463]: np.exp.reduce(tata,axes=(1,2),out=np.arange(3))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2), 'out': (array([0, 1, 2]),)


          That shows the information that your class receives. Evidently you can do what you want that. It can return NotImplemented. I suppose in your case it could apply the first argument to your self.value, or do some custom calculation.



          For example if I add



           val = args[0].__call__(self.value) 
          return toto(val, self.name)


          I get:



          In [468]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          Out[468]: toto: 148.4131591025766, first
          In [469]: np.sin(tata)
          (<ufunc 'sin'>, '__call__', toto: 5, first)

          Out[469]: toto: -0.9589242746631385, first


          However if I put the object in an array, I still get the method error



          In [492]: np.exp(np.array(tata)) 
          ---------------------------------------------------------------------------
          AttributeError Traceback (most recent call last)
          <ipython-input-492-4dc37eb0ffe3> in <module>
          ----> 1 np.exp(np.array(tata))

          AttributeError: 'toto' object has no attribute 'exp'


          Apparently ufunc on an object dtype array iterates on the elements of the array, expecting to use a 'relevant' method. For np.add (+) it looks for the __add__ method. For np.exp it looks for an exp method. This __array_ufunc__ isn't called.



          So it looks like it's intended more for a subclass of ndarray, or something equivalent. You, I think, are trying to implement a class that can work as elements of an object dtype array.






          share|improve this answer



























          • Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

            – mocquin
            Mar 28 at 10:59










          Your Answer






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          1 Answer
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          1 Answer
          1






          active

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          active

          oldest

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          active

          oldest

          votes









          0















          If I extend your class with a __array_ufunc__ method (and __repr__):



          class toto():
          def __init__(self, value, name):
          self.value = value
          self.name = name
          def __add__(self, other):
          """add values and concatenate names"""
          return toto(self.value + other.value, self.name + other.name)
          def __sub__(self, other):
          """sub values and concatenate names"""
          return toto(self.value - other.value, self.name + other.name)

          def __repr__(self):
          return f"toto: self.value, self.name"
          def __array_ufunc__(self, *args, **kwargs):
          print(args)
          print(kwargs)


          And try some ufunc calls:



          In [458]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          In [459]: np.exp.reduce(tata)
          (<ufunc 'exp'>, 'reduce', toto: 5, first)

          In [460]: np.multiply.reduce(tata)
          (<ufunc 'multiply'>, 'reduce', toto: 5, first)

          In [461]: np.exp.reduce(tata,axes=(1,2))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2)
          In [463]: np.exp.reduce(tata,axes=(1,2),out=np.arange(3))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2), 'out': (array([0, 1, 2]),)


          That shows the information that your class receives. Evidently you can do what you want that. It can return NotImplemented. I suppose in your case it could apply the first argument to your self.value, or do some custom calculation.



          For example if I add



           val = args[0].__call__(self.value) 
          return toto(val, self.name)


          I get:



          In [468]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          Out[468]: toto: 148.4131591025766, first
          In [469]: np.sin(tata)
          (<ufunc 'sin'>, '__call__', toto: 5, first)

          Out[469]: toto: -0.9589242746631385, first


          However if I put the object in an array, I still get the method error



          In [492]: np.exp(np.array(tata)) 
          ---------------------------------------------------------------------------
          AttributeError Traceback (most recent call last)
          <ipython-input-492-4dc37eb0ffe3> in <module>
          ----> 1 np.exp(np.array(tata))

          AttributeError: 'toto' object has no attribute 'exp'


          Apparently ufunc on an object dtype array iterates on the elements of the array, expecting to use a 'relevant' method. For np.add (+) it looks for the __add__ method. For np.exp it looks for an exp method. This __array_ufunc__ isn't called.



          So it looks like it's intended more for a subclass of ndarray, or something equivalent. You, I think, are trying to implement a class that can work as elements of an object dtype array.






          share|improve this answer



























          • Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

            – mocquin
            Mar 28 at 10:59















          0















          If I extend your class with a __array_ufunc__ method (and __repr__):



          class toto():
          def __init__(self, value, name):
          self.value = value
          self.name = name
          def __add__(self, other):
          """add values and concatenate names"""
          return toto(self.value + other.value, self.name + other.name)
          def __sub__(self, other):
          """sub values and concatenate names"""
          return toto(self.value - other.value, self.name + other.name)

          def __repr__(self):
          return f"toto: self.value, self.name"
          def __array_ufunc__(self, *args, **kwargs):
          print(args)
          print(kwargs)


          And try some ufunc calls:



          In [458]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          In [459]: np.exp.reduce(tata)
          (<ufunc 'exp'>, 'reduce', toto: 5, first)

          In [460]: np.multiply.reduce(tata)
          (<ufunc 'multiply'>, 'reduce', toto: 5, first)

          In [461]: np.exp.reduce(tata,axes=(1,2))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2)
          In [463]: np.exp.reduce(tata,axes=(1,2),out=np.arange(3))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2), 'out': (array([0, 1, 2]),)


          That shows the information that your class receives. Evidently you can do what you want that. It can return NotImplemented. I suppose in your case it could apply the first argument to your self.value, or do some custom calculation.



          For example if I add



           val = args[0].__call__(self.value) 
          return toto(val, self.name)


          I get:



          In [468]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          Out[468]: toto: 148.4131591025766, first
          In [469]: np.sin(tata)
          (<ufunc 'sin'>, '__call__', toto: 5, first)

          Out[469]: toto: -0.9589242746631385, first


          However if I put the object in an array, I still get the method error



          In [492]: np.exp(np.array(tata)) 
          ---------------------------------------------------------------------------
          AttributeError Traceback (most recent call last)
          <ipython-input-492-4dc37eb0ffe3> in <module>
          ----> 1 np.exp(np.array(tata))

          AttributeError: 'toto' object has no attribute 'exp'


          Apparently ufunc on an object dtype array iterates on the elements of the array, expecting to use a 'relevant' method. For np.add (+) it looks for the __add__ method. For np.exp it looks for an exp method. This __array_ufunc__ isn't called.



          So it looks like it's intended more for a subclass of ndarray, or something equivalent. You, I think, are trying to implement a class that can work as elements of an object dtype array.






          share|improve this answer



























          • Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

            – mocquin
            Mar 28 at 10:59













          0














          0










          0









          If I extend your class with a __array_ufunc__ method (and __repr__):



          class toto():
          def __init__(self, value, name):
          self.value = value
          self.name = name
          def __add__(self, other):
          """add values and concatenate names"""
          return toto(self.value + other.value, self.name + other.name)
          def __sub__(self, other):
          """sub values and concatenate names"""
          return toto(self.value - other.value, self.name + other.name)

          def __repr__(self):
          return f"toto: self.value, self.name"
          def __array_ufunc__(self, *args, **kwargs):
          print(args)
          print(kwargs)


          And try some ufunc calls:



          In [458]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          In [459]: np.exp.reduce(tata)
          (<ufunc 'exp'>, 'reduce', toto: 5, first)

          In [460]: np.multiply.reduce(tata)
          (<ufunc 'multiply'>, 'reduce', toto: 5, first)

          In [461]: np.exp.reduce(tata,axes=(1,2))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2)
          In [463]: np.exp.reduce(tata,axes=(1,2),out=np.arange(3))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2), 'out': (array([0, 1, 2]),)


          That shows the information that your class receives. Evidently you can do what you want that. It can return NotImplemented. I suppose in your case it could apply the first argument to your self.value, or do some custom calculation.



          For example if I add



           val = args[0].__call__(self.value) 
          return toto(val, self.name)


          I get:



          In [468]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          Out[468]: toto: 148.4131591025766, first
          In [469]: np.sin(tata)
          (<ufunc 'sin'>, '__call__', toto: 5, first)

          Out[469]: toto: -0.9589242746631385, first


          However if I put the object in an array, I still get the method error



          In [492]: np.exp(np.array(tata)) 
          ---------------------------------------------------------------------------
          AttributeError Traceback (most recent call last)
          <ipython-input-492-4dc37eb0ffe3> in <module>
          ----> 1 np.exp(np.array(tata))

          AttributeError: 'toto' object has no attribute 'exp'


          Apparently ufunc on an object dtype array iterates on the elements of the array, expecting to use a 'relevant' method. For np.add (+) it looks for the __add__ method. For np.exp it looks for an exp method. This __array_ufunc__ isn't called.



          So it looks like it's intended more for a subclass of ndarray, or something equivalent. You, I think, are trying to implement a class that can work as elements of an object dtype array.






          share|improve this answer















          If I extend your class with a __array_ufunc__ method (and __repr__):



          class toto():
          def __init__(self, value, name):
          self.value = value
          self.name = name
          def __add__(self, other):
          """add values and concatenate names"""
          return toto(self.value + other.value, self.name + other.name)
          def __sub__(self, other):
          """sub values and concatenate names"""
          return toto(self.value - other.value, self.name + other.name)

          def __repr__(self):
          return f"toto: self.value, self.name"
          def __array_ufunc__(self, *args, **kwargs):
          print(args)
          print(kwargs)


          And try some ufunc calls:



          In [458]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          In [459]: np.exp.reduce(tata)
          (<ufunc 'exp'>, 'reduce', toto: 5, first)

          In [460]: np.multiply.reduce(tata)
          (<ufunc 'multiply'>, 'reduce', toto: 5, first)

          In [461]: np.exp.reduce(tata,axes=(1,2))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2)
          In [463]: np.exp.reduce(tata,axes=(1,2),out=np.arange(3))
          (<ufunc 'exp'>, 'reduce', toto: 5, first)
          'axes': (1, 2), 'out': (array([0, 1, 2]),)


          That shows the information that your class receives. Evidently you can do what you want that. It can return NotImplemented. I suppose in your case it could apply the first argument to your self.value, or do some custom calculation.



          For example if I add



           val = args[0].__call__(self.value) 
          return toto(val, self.name)


          I get:



          In [468]: np.exp(tata) 
          (<ufunc 'exp'>, '__call__', toto: 5, first)

          Out[468]: toto: 148.4131591025766, first
          In [469]: np.sin(tata)
          (<ufunc 'sin'>, '__call__', toto: 5, first)

          Out[469]: toto: -0.9589242746631385, first


          However if I put the object in an array, I still get the method error



          In [492]: np.exp(np.array(tata)) 
          ---------------------------------------------------------------------------
          AttributeError Traceback (most recent call last)
          <ipython-input-492-4dc37eb0ffe3> in <module>
          ----> 1 np.exp(np.array(tata))

          AttributeError: 'toto' object has no attribute 'exp'


          Apparently ufunc on an object dtype array iterates on the elements of the array, expecting to use a 'relevant' method. For np.add (+) it looks for the __add__ method. For np.exp it looks for an exp method. This __array_ufunc__ isn't called.



          So it looks like it's intended more for a subclass of ndarray, or something equivalent. You, I think, are trying to implement a class that can work as elements of an object dtype array.







          share|improve this answer














          share|improve this answer



          share|improve this answer








          edited Mar 28 at 2:05

























          answered Mar 28 at 1:22









          hpauljhpaulj

          127k7 gold badges101 silver badges179 bronze badges




          127k7 gold badges101 silver badges179 bronze badges















          • Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

            – mocquin
            Mar 28 at 10:59

















          • Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

            – mocquin
            Mar 28 at 10:59
















          Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

          – mocquin
          Mar 28 at 10:59





          Thanks for your insights. Although they do mention in the doc that this method can be defined to extend any class, ndarray sub-classed or not.

          – mocquin
          Mar 28 at 10:59








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