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How to copy attributes from one data frame to another or to re-assign attributes to a freshly transposed data frame - R
How to join (merge) data frames (inner, outer, left, right)How to convert a data frame column to numeric type?How to drop columns by name in a data frameHow does one reorder columns in a data frame?Transpose a data frameExtracting specific columns from a data frameHow to convert a table to a data frameTransposing a data frameFind AUC with tree package - binary responseTransposing data frames
.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;
After transposing data I'd like to re-assign attributes that are dropped. This could also be applicable to copying attributes from one data frame to another. Or copying attributes after mutates, etc., where they are dropped.
library(reshape2)
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
d = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$d,"label")<- "count of something"
str(df)
str(df)
data.frame': 5 obs. of 4 variables:
$ id : num 1 2 3 4 5
..- attr(*, "label")= chr "label"
$ time: num 11 22 33 44 55
..- attr(*, "label")= chr "label2"
$ c : num 1 2 3 5 5
..- attr(*, "label")= chr "something here"
$ d : num 4 2 5 4 NA
..- attr(*, "label")= chr "count of something"
Cast to wide
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
Usual attribute lost message:
Warning message:
attributes are not identical across measure variables; they will be dropped
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
$ c_22: num NA 2 NA NA NA
$ c_33: num NA NA 3 NA NA
$ c_44: num NA NA NA 5 NA
$ c_55: num NA NA NA NA 5
$ d_11: num 4 NA NA NA NA
$ d_22: num NA 2 NA NA NA
$ d_33: num NA NA 5 NA NA
$ d_44: num NA NA NA 4 NA
$ d_55: num NA NA NA NA NA
Using mostattributes one can copy attributes between dataframes, but for iterations over many column names I can't figure out or think about how to map this efficiently in a different way save one by one.
mostattributes(dfwide$c_11)<-attributes(df$c)
mostattributes(dfwide$c_22)<-attributes(df$c)
> str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ c_33: num NA NA 3 NA NA
I was trying to automate it but failed (all c's should have same labels and d's have same labels):
#extract arguments
dlist<-enframe(names(df))%>%
slice(-1,-2)%>%
pull(., value)
dlist
dlistw<-enframe(names(dfwide))%>%
slice(-1)%>%
pull(., value)
dlistw
#function
mostatt<- function(var1, var2)
mostattributes(dfwide[[var1]])<<-attributes(df[[var2]])
mapply(mostatt,dlistw,dlist)
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "count of something"
$ c_33: num NA NA 3 NA NA
..- attr(*, "label")= chr "something here"
$ c_44: num NA NA NA 5 NA
..- attr(*, "label")= chr "count of something"
$ c_55: num NA NA NA NA 5
..- attr(*, "label")= chr "something here"
$ d_11: num 4 NA NA NA NA
..- attr(*, "label")= chr "count of something"
$ d_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ d_33: num NA NA 5 NA NA
..- attr(*, "label")= chr "count of something"
$ d_44: num NA NA NA 4 NA
..- attr(*, "label")= chr "something here"
$ d_55: num NA NA NA NA NA
..- attr(*, "label")= chr "count of something"
I think using tidyselect starts_with might be worth a try but not sure how to incorporate it. Any suggestions would be appreciated. Thank you!
r attr purrr reshape2 tidyselect
add a comment |
After transposing data I'd like to re-assign attributes that are dropped. This could also be applicable to copying attributes from one data frame to another. Or copying attributes after mutates, etc., where they are dropped.
library(reshape2)
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
d = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$d,"label")<- "count of something"
str(df)
str(df)
data.frame': 5 obs. of 4 variables:
$ id : num 1 2 3 4 5
..- attr(*, "label")= chr "label"
$ time: num 11 22 33 44 55
..- attr(*, "label")= chr "label2"
$ c : num 1 2 3 5 5
..- attr(*, "label")= chr "something here"
$ d : num 4 2 5 4 NA
..- attr(*, "label")= chr "count of something"
Cast to wide
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
Usual attribute lost message:
Warning message:
attributes are not identical across measure variables; they will be dropped
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
$ c_22: num NA 2 NA NA NA
$ c_33: num NA NA 3 NA NA
$ c_44: num NA NA NA 5 NA
$ c_55: num NA NA NA NA 5
$ d_11: num 4 NA NA NA NA
$ d_22: num NA 2 NA NA NA
$ d_33: num NA NA 5 NA NA
$ d_44: num NA NA NA 4 NA
$ d_55: num NA NA NA NA NA
Using mostattributes one can copy attributes between dataframes, but for iterations over many column names I can't figure out or think about how to map this efficiently in a different way save one by one.
mostattributes(dfwide$c_11)<-attributes(df$c)
mostattributes(dfwide$c_22)<-attributes(df$c)
> str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ c_33: num NA NA 3 NA NA
I was trying to automate it but failed (all c's should have same labels and d's have same labels):
#extract arguments
dlist<-enframe(names(df))%>%
slice(-1,-2)%>%
pull(., value)
dlist
dlistw<-enframe(names(dfwide))%>%
slice(-1)%>%
pull(., value)
dlistw
#function
mostatt<- function(var1, var2)
mostattributes(dfwide[[var1]])<<-attributes(df[[var2]])
mapply(mostatt,dlistw,dlist)
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "count of something"
$ c_33: num NA NA 3 NA NA
..- attr(*, "label")= chr "something here"
$ c_44: num NA NA NA 5 NA
..- attr(*, "label")= chr "count of something"
$ c_55: num NA NA NA NA 5
..- attr(*, "label")= chr "something here"
$ d_11: num 4 NA NA NA NA
..- attr(*, "label")= chr "count of something"
$ d_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ d_33: num NA NA 5 NA NA
..- attr(*, "label")= chr "count of something"
$ d_44: num NA NA NA 4 NA
..- attr(*, "label")= chr "something here"
$ d_55: num NA NA NA NA NA
..- attr(*, "label")= chr "count of something"
I think using tidyselect starts_with might be worth a try but not sure how to incorporate it. Any suggestions would be appreciated. Thank you!
r attr purrr reshape2 tidyselect
add a comment |
After transposing data I'd like to re-assign attributes that are dropped. This could also be applicable to copying attributes from one data frame to another. Or copying attributes after mutates, etc., where they are dropped.
library(reshape2)
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
d = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$d,"label")<- "count of something"
str(df)
str(df)
data.frame': 5 obs. of 4 variables:
$ id : num 1 2 3 4 5
..- attr(*, "label")= chr "label"
$ time: num 11 22 33 44 55
..- attr(*, "label")= chr "label2"
$ c : num 1 2 3 5 5
..- attr(*, "label")= chr "something here"
$ d : num 4 2 5 4 NA
..- attr(*, "label")= chr "count of something"
Cast to wide
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
Usual attribute lost message:
Warning message:
attributes are not identical across measure variables; they will be dropped
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
$ c_22: num NA 2 NA NA NA
$ c_33: num NA NA 3 NA NA
$ c_44: num NA NA NA 5 NA
$ c_55: num NA NA NA NA 5
$ d_11: num 4 NA NA NA NA
$ d_22: num NA 2 NA NA NA
$ d_33: num NA NA 5 NA NA
$ d_44: num NA NA NA 4 NA
$ d_55: num NA NA NA NA NA
Using mostattributes one can copy attributes between dataframes, but for iterations over many column names I can't figure out or think about how to map this efficiently in a different way save one by one.
mostattributes(dfwide$c_11)<-attributes(df$c)
mostattributes(dfwide$c_22)<-attributes(df$c)
> str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ c_33: num NA NA 3 NA NA
I was trying to automate it but failed (all c's should have same labels and d's have same labels):
#extract arguments
dlist<-enframe(names(df))%>%
slice(-1,-2)%>%
pull(., value)
dlist
dlistw<-enframe(names(dfwide))%>%
slice(-1)%>%
pull(., value)
dlistw
#function
mostatt<- function(var1, var2)
mostattributes(dfwide[[var1]])<<-attributes(df[[var2]])
mapply(mostatt,dlistw,dlist)
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "count of something"
$ c_33: num NA NA 3 NA NA
..- attr(*, "label")= chr "something here"
$ c_44: num NA NA NA 5 NA
..- attr(*, "label")= chr "count of something"
$ c_55: num NA NA NA NA 5
..- attr(*, "label")= chr "something here"
$ d_11: num 4 NA NA NA NA
..- attr(*, "label")= chr "count of something"
$ d_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ d_33: num NA NA 5 NA NA
..- attr(*, "label")= chr "count of something"
$ d_44: num NA NA NA 4 NA
..- attr(*, "label")= chr "something here"
$ d_55: num NA NA NA NA NA
..- attr(*, "label")= chr "count of something"
I think using tidyselect starts_with might be worth a try but not sure how to incorporate it. Any suggestions would be appreciated. Thank you!
r attr purrr reshape2 tidyselect
After transposing data I'd like to re-assign attributes that are dropped. This could also be applicable to copying attributes from one data frame to another. Or copying attributes after mutates, etc., where they are dropped.
library(reshape2)
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
d = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$d,"label")<- "count of something"
str(df)
str(df)
data.frame': 5 obs. of 4 variables:
$ id : num 1 2 3 4 5
..- attr(*, "label")= chr "label"
$ time: num 11 22 33 44 55
..- attr(*, "label")= chr "label2"
$ c : num 1 2 3 5 5
..- attr(*, "label")= chr "something here"
$ d : num 4 2 5 4 NA
..- attr(*, "label")= chr "count of something"
Cast to wide
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
Usual attribute lost message:
Warning message:
attributes are not identical across measure variables; they will be dropped
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
$ c_22: num NA 2 NA NA NA
$ c_33: num NA NA 3 NA NA
$ c_44: num NA NA NA 5 NA
$ c_55: num NA NA NA NA 5
$ d_11: num 4 NA NA NA NA
$ d_22: num NA 2 NA NA NA
$ d_33: num NA NA 5 NA NA
$ d_44: num NA NA NA 4 NA
$ d_55: num NA NA NA NA NA
Using mostattributes one can copy attributes between dataframes, but for iterations over many column names I can't figure out or think about how to map this efficiently in a different way save one by one.
mostattributes(dfwide$c_11)<-attributes(df$c)
mostattributes(dfwide$c_22)<-attributes(df$c)
> str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ c_33: num NA NA 3 NA NA
I was trying to automate it but failed (all c's should have same labels and d's have same labels):
#extract arguments
dlist<-enframe(names(df))%>%
slice(-1,-2)%>%
pull(., value)
dlist
dlistw<-enframe(names(dfwide))%>%
slice(-1)%>%
pull(., value)
dlistw
#function
mostatt<- function(var1, var2)
mostattributes(dfwide[[var1]])<<-attributes(df[[var2]])
mapply(mostatt,dlistw,dlist)
str(dfwide)
'data.frame': 5 obs. of 11 variables:
$ id : num 1 2 3 4 5
$ c_11: num 1 NA NA NA NA
..- attr(*, "label")= chr "something here"
$ c_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "count of something"
$ c_33: num NA NA 3 NA NA
..- attr(*, "label")= chr "something here"
$ c_44: num NA NA NA 5 NA
..- attr(*, "label")= chr "count of something"
$ c_55: num NA NA NA NA 5
..- attr(*, "label")= chr "something here"
$ d_11: num 4 NA NA NA NA
..- attr(*, "label")= chr "count of something"
$ d_22: num NA 2 NA NA NA
..- attr(*, "label")= chr "something here"
$ d_33: num NA NA 5 NA NA
..- attr(*, "label")= chr "count of something"
$ d_44: num NA NA NA 4 NA
..- attr(*, "label")= chr "something here"
$ d_55: num NA NA NA NA NA
..- attr(*, "label")= chr "count of something"
I think using tidyselect starts_with might be worth a try but not sure how to incorporate it. Any suggestions would be appreciated. Thank you!
r attr purrr reshape2 tidyselect
r attr purrr reshape2 tidyselect
edited Mar 26 at 17:53
23stacks1254
asked Mar 25 at 20:30
23stacks125423stacks1254
747 bronze badges
747 bronze badges
add a comment |
add a comment |
1 Answer
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This is an option:
for(i in (setdiff(colnames(df), "id")))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
mostattributes(dfwide$id) <- attributes(df$id)
Because d is contained in id I need to rewrite id at the end.
If you change d for e is even simplier:
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
e = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$e,"label")<- "count of something"
str(df)
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
for(i in (colnames(df)))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
add a comment |
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1 Answer
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This is an option:
for(i in (setdiff(colnames(df), "id")))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
mostattributes(dfwide$id) <- attributes(df$id)
Because d is contained in id I need to rewrite id at the end.
If you change d for e is even simplier:
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
e = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$e,"label")<- "count of something"
str(df)
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
for(i in (colnames(df)))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
add a comment |
This is an option:
for(i in (setdiff(colnames(df), "id")))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
mostattributes(dfwide$id) <- attributes(df$id)
Because d is contained in id I need to rewrite id at the end.
If you change d for e is even simplier:
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
e = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$e,"label")<- "count of something"
str(df)
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
for(i in (colnames(df)))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
add a comment |
This is an option:
for(i in (setdiff(colnames(df), "id")))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
mostattributes(dfwide$id) <- attributes(df$id)
Because d is contained in id I need to rewrite id at the end.
If you change d for e is even simplier:
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
e = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$e,"label")<- "count of something"
str(df)
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
for(i in (colnames(df)))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
This is an option:
for(i in (setdiff(colnames(df), "id")))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
mostattributes(dfwide$id) <- attributes(df$id)
Because d is contained in id I need to rewrite id at the end.
If you change d for e is even simplier:
df <- data.frame(id = c(1,2,3,4,5),
time = c(11, 22,33,44,55),
c = c(1,2,3,5,5),
e = c(4,2,5,4,NA))
attr(df$id,"label")<- "label"
attr(df$time,"label")<- "label2"
attr(df$c,"label")<- "something here"
attr(df$e,"label")<- "count of something"
str(df)
dfwide<- recast(df,id~variable +time,
id.var = c("id","time"))
for(i in (colnames(df)))
for(x in colnames(dfwide)[(grepl(i, colnames(dfwide)))])
mostattributes(dfwide[[x]]) <- attributes(df[[i]])
answered Mar 26 at 10:42
LocoGrisLocoGris
2,9332 gold badges10 silver badges28 bronze badges
2,9332 gold badges10 silver badges28 bronze badges
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
add a comment |
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
1
1
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
That's a good option. Thank you for sharing. I didn't realize one could grep/grepl like that. I wonder if there is a way to add a regex carat ^ to the statement to signify the start position of the pattern. I'll play around with it. But as it is this solution works for me because the colnames in the dataframes I have are much longer and the grepl will work on those strings instead of a single character. Thank you again!
– 23stacks1254
Mar 26 at 17:41
add a comment |
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