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Python: connecting close dots in 3D scatter plot
Calling an external command in PythonWhat are metaclasses in Python?Is there a way to run Python on Android?Finding the index of an item given a list containing it in PythonWhat is the difference between Python's list methods append and extend?How can I safely create a nested directory?Does Python have a ternary conditional operator?How to get the current time in PythonHow can I make a time delay in Python?Does Python have a string 'contains' substring method?
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short: I want to connect dots that are close to each other in a 3D scatter plot with lines to get some "3D wired look" 3D model.
Background: I got from a microscope an image stack from a fish. I want to show specific cells in that fish. The Software gives me X, Y, Z values of these cells and im plotting them in a scatter 3D plot. To get an context I collected a lot of values (XYZ) from the skin too and want to plot them "arround" the whole thing to get the look of an fish. If I would be able to connect these dots with lines Id get some kind of "wired" fish wich would be great. It would be even greater if id be able to fill the planes in the wire (that would be a 3D fish).
#data of the cells
X = np.array(df["X"])
Y = np.array(df["Y"])
Z = np.array(df["Z"])
#data of the fishskin
XF = np.array(df["XF"])
YF = np.array(df["YF"])
ZF = np.array(df["ZF"])
ax.scatter(XF, YF, ZF, s=40, c='b', marker='o')
ax.scatter(XV, YV, ZV, s=40, c='r', marker='o')
plt.show()
thats what I did so far, very basic but hey, im rookie.
The only language im a litte into is python but I also got MatLab and toyed arround with Blender a little. If you think my problem would be a lot easier to solve in one of these programs (maybe model the fish in blender end import him to Python or whatever) tell me! I was searching arround the whole day but maybe im using the wrong keywords or smthing couse I wasnt successfull.
python matplotlib 3d scatter
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
add a comment |
short: I want to connect dots that are close to each other in a 3D scatter plot with lines to get some "3D wired look" 3D model.
Background: I got from a microscope an image stack from a fish. I want to show specific cells in that fish. The Software gives me X, Y, Z values of these cells and im plotting them in a scatter 3D plot. To get an context I collected a lot of values (XYZ) from the skin too and want to plot them "arround" the whole thing to get the look of an fish. If I would be able to connect these dots with lines Id get some kind of "wired" fish wich would be great. It would be even greater if id be able to fill the planes in the wire (that would be a 3D fish).
#data of the cells
X = np.array(df["X"])
Y = np.array(df["Y"])
Z = np.array(df["Z"])
#data of the fishskin
XF = np.array(df["XF"])
YF = np.array(df["YF"])
ZF = np.array(df["ZF"])
ax.scatter(XF, YF, ZF, s=40, c='b', marker='o')
ax.scatter(XV, YV, ZV, s=40, c='r', marker='o')
plt.show()
thats what I did so far, very basic but hey, im rookie.
The only language im a litte into is python but I also got MatLab and toyed arround with Blender a little. If you think my problem would be a lot easier to solve in one of these programs (maybe model the fish in blender end import him to Python or whatever) tell me! I was searching arround the whole day but maybe im using the wrong keywords or smthing couse I wasnt successfull.
python matplotlib 3d scatter
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
add a comment |
short: I want to connect dots that are close to each other in a 3D scatter plot with lines to get some "3D wired look" 3D model.
Background: I got from a microscope an image stack from a fish. I want to show specific cells in that fish. The Software gives me X, Y, Z values of these cells and im plotting them in a scatter 3D plot. To get an context I collected a lot of values (XYZ) from the skin too and want to plot them "arround" the whole thing to get the look of an fish. If I would be able to connect these dots with lines Id get some kind of "wired" fish wich would be great. It would be even greater if id be able to fill the planes in the wire (that would be a 3D fish).
#data of the cells
X = np.array(df["X"])
Y = np.array(df["Y"])
Z = np.array(df["Z"])
#data of the fishskin
XF = np.array(df["XF"])
YF = np.array(df["YF"])
ZF = np.array(df["ZF"])
ax.scatter(XF, YF, ZF, s=40, c='b', marker='o')
ax.scatter(XV, YV, ZV, s=40, c='r', marker='o')
plt.show()
thats what I did so far, very basic but hey, im rookie.
The only language im a litte into is python but I also got MatLab and toyed arround with Blender a little. If you think my problem would be a lot easier to solve in one of these programs (maybe model the fish in blender end import him to Python or whatever) tell me! I was searching arround the whole day but maybe im using the wrong keywords or smthing couse I wasnt successfull.
python matplotlib 3d scatter
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
short: I want to connect dots that are close to each other in a 3D scatter plot with lines to get some "3D wired look" 3D model.
Background: I got from a microscope an image stack from a fish. I want to show specific cells in that fish. The Software gives me X, Y, Z values of these cells and im plotting them in a scatter 3D plot. To get an context I collected a lot of values (XYZ) from the skin too and want to plot them "arround" the whole thing to get the look of an fish. If I would be able to connect these dots with lines Id get some kind of "wired" fish wich would be great. It would be even greater if id be able to fill the planes in the wire (that would be a 3D fish).
#data of the cells
X = np.array(df["X"])
Y = np.array(df["Y"])
Z = np.array(df["Z"])
#data of the fishskin
XF = np.array(df["XF"])
YF = np.array(df["YF"])
ZF = np.array(df["ZF"])
ax.scatter(XF, YF, ZF, s=40, c='b', marker='o')
ax.scatter(XV, YV, ZV, s=40, c='r', marker='o')
plt.show()
thats what I did so far, very basic but hey, im rookie.
The only language im a litte into is python but I also got MatLab and toyed arround with Blender a little. If you think my problem would be a lot easier to solve in one of these programs (maybe model the fish in blender end import him to Python or whatever) tell me! I was searching arround the whole day but maybe im using the wrong keywords or smthing couse I wasnt successfull.
python matplotlib 3d scatter
python matplotlib 3d scatter
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
asked Mar 27 at 16:27
Albus DumbledoreAlbus Dumbledore
52 bronze badges
52 bronze badges
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
If I understand your question correctly, you would like to create an unstructured triangular grid. If this is the case, then I suggest you check out this tutorial on the Matplotlib website.
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
add a comment |
Your Answer
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
If I understand your question correctly, you would like to create an unstructured triangular grid. If this is the case, then I suggest you check out this tutorial on the Matplotlib website.
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
add a comment |
If I understand your question correctly, you would like to create an unstructured triangular grid. If this is the case, then I suggest you check out this tutorial on the Matplotlib website.
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
add a comment |
If I understand your question correctly, you would like to create an unstructured triangular grid. If this is the case, then I suggest you check out this tutorial on the Matplotlib website.
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
If I understand your question correctly, you would like to create an unstructured triangular grid. If this is the case, then I suggest you check out this tutorial on the Matplotlib website.
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
answered Mar 27 at 16:31
SheldonSheldon
6255 silver badges15 bronze badges
6255 silver badges15 bronze badges
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
add a comment |
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
Yes, the idea is right but I need it to be automated. Its to much data to do connect the dots manually.
– Albus Dumbledore
Mar 27 at 16:59
add a comment |
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