CountVectorizer values work alone in classifier, cannot get working when adding other featuresWhy this errror appears during fit while creating decision Tree ClassifierI'm trying to build a random forest classifier upon a liver disorder data set. But the fit method returns an error as such:got error:Input contains NaN, infinity or a value too large for dtype('float64')Categorical attributes to Sparse Matrixmin-max standardization for the datasetPython Decicion Tree ClassifierValueError: Input contains NaN, infinity or a value too large for dtype('float32')The shape_index feature from sklearn not able to apply PCA, due to a NaN errorValueError: could not convert string to float: '15ML'Why this program could not convert string to float in Python

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CountVectorizer values work alone in classifier, cannot get working when adding other features


Why this errror appears during fit while creating decision Tree ClassifierI'm trying to build a random forest classifier upon a liver disorder data set. But the fit method returns an error as such:got error:Input contains NaN, infinity or a value too large for dtype('float64')Categorical attributes to Sparse Matrixmin-max standardization for the datasetPython Decicion Tree ClassifierValueError: Input contains NaN, infinity or a value too large for dtype('float32')The shape_index feature from sklearn not able to apply PCA, due to a NaN errorValueError: could not convert string to float: '15ML'Why this program could not convert string to float in Python






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty height:90px;width:728px;box-sizing:border-box;








1















I have a CSV of twitter profile data, containing: name, description, followers count, following count, bot (class I want to predict)



I have successfully executed a classification model when using just the CountVectorizer values (xtrain) and Bot (ytrain). But have not been able to add this feature to my set of other features.



vectorizer = CountVectorizer()
CountVecTest = vectorizer.fit_transform(training_data.description.values.astype('U'))
CountVecTest = CountVecTest.toarray()
arr = sparse.coo_matrix(CountVecTest)
training_data["NewCol"] = arr.toarray().tolist()

rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)


ERROR:



---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-54-7d67a6586592> in <module>()
1 rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
----> 2 rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)

D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnensembleforest.py in fit(self, X, y, sample_weight)
245 """
246 # Validate or convert input data
--> 247 X = check_array(X, accept_sparse="csc", dtype=DTYPE)
248 y = check_array(y, accept_sparse='csc', ensure_2d=False, dtype=None)
249 if sample_weight is not None:

D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnutilsvalidation.py in check_array(array, accept_sparse, dtype, order, copy, force_all_finite, ensure_2d, allow_nd, ensure_min_samples, ensure_min_features, warn_on_dtype, estimator)
431 force_all_finite)
432 else:
--> 433 array = np.array(array, dtype=dtype, order=order, copy=copy)
434
435 if ensure_2d:

ValueError: setting an array element with a sequence.


I did some debugging:



print(type(training_data.NewCol))
print(type(training_data.NewCol[0]))
>>> <class 'pandas.core.series.Series'>
>>> <class 'numpy.ndarray'>


Any help would be appreciated.










share|improve this question




























    1















    I have a CSV of twitter profile data, containing: name, description, followers count, following count, bot (class I want to predict)



    I have successfully executed a classification model when using just the CountVectorizer values (xtrain) and Bot (ytrain). But have not been able to add this feature to my set of other features.



    vectorizer = CountVectorizer()
    CountVecTest = vectorizer.fit_transform(training_data.description.values.astype('U'))
    CountVecTest = CountVecTest.toarray()
    arr = sparse.coo_matrix(CountVecTest)
    training_data["NewCol"] = arr.toarray().tolist()

    rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
    rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)


    ERROR:



    ---------------------------------------------------------------------------
    ValueError Traceback (most recent call last)
    <ipython-input-54-7d67a6586592> in <module>()
    1 rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
    ----> 2 rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)

    D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnensembleforest.py in fit(self, X, y, sample_weight)
    245 """
    246 # Validate or convert input data
    --> 247 X = check_array(X, accept_sparse="csc", dtype=DTYPE)
    248 y = check_array(y, accept_sparse='csc', ensure_2d=False, dtype=None)
    249 if sample_weight is not None:

    D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnutilsvalidation.py in check_array(array, accept_sparse, dtype, order, copy, force_all_finite, ensure_2d, allow_nd, ensure_min_samples, ensure_min_features, warn_on_dtype, estimator)
    431 force_all_finite)
    432 else:
    --> 433 array = np.array(array, dtype=dtype, order=order, copy=copy)
    434
    435 if ensure_2d:

    ValueError: setting an array element with a sequence.


    I did some debugging:



    print(type(training_data.NewCol))
    print(type(training_data.NewCol[0]))
    >>> <class 'pandas.core.series.Series'>
    >>> <class 'numpy.ndarray'>


    Any help would be appreciated.










    share|improve this question
























      1












      1








      1








      I have a CSV of twitter profile data, containing: name, description, followers count, following count, bot (class I want to predict)



      I have successfully executed a classification model when using just the CountVectorizer values (xtrain) and Bot (ytrain). But have not been able to add this feature to my set of other features.



      vectorizer = CountVectorizer()
      CountVecTest = vectorizer.fit_transform(training_data.description.values.astype('U'))
      CountVecTest = CountVecTest.toarray()
      arr = sparse.coo_matrix(CountVecTest)
      training_data["NewCol"] = arr.toarray().tolist()

      rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
      rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)


      ERROR:



      ---------------------------------------------------------------------------
      ValueError Traceback (most recent call last)
      <ipython-input-54-7d67a6586592> in <module>()
      1 rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
      ----> 2 rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)

      D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnensembleforest.py in fit(self, X, y, sample_weight)
      245 """
      246 # Validate or convert input data
      --> 247 X = check_array(X, accept_sparse="csc", dtype=DTYPE)
      248 y = check_array(y, accept_sparse='csc', ensure_2d=False, dtype=None)
      249 if sample_weight is not None:

      D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnutilsvalidation.py in check_array(array, accept_sparse, dtype, order, copy, force_all_finite, ensure_2d, allow_nd, ensure_min_samples, ensure_min_features, warn_on_dtype, estimator)
      431 force_all_finite)
      432 else:
      --> 433 array = np.array(array, dtype=dtype, order=order, copy=copy)
      434
      435 if ensure_2d:

      ValueError: setting an array element with a sequence.


      I did some debugging:



      print(type(training_data.NewCol))
      print(type(training_data.NewCol[0]))
      >>> <class 'pandas.core.series.Series'>
      >>> <class 'numpy.ndarray'>


      Any help would be appreciated.










      share|improve this question














      I have a CSV of twitter profile data, containing: name, description, followers count, following count, bot (class I want to predict)



      I have successfully executed a classification model when using just the CountVectorizer values (xtrain) and Bot (ytrain). But have not been able to add this feature to my set of other features.



      vectorizer = CountVectorizer()
      CountVecTest = vectorizer.fit_transform(training_data.description.values.astype('U'))
      CountVecTest = CountVecTest.toarray()
      arr = sparse.coo_matrix(CountVecTest)
      training_data["NewCol"] = arr.toarray().tolist()

      rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
      rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)


      ERROR:



      ---------------------------------------------------------------------------
      ValueError Traceback (most recent call last)
      <ipython-input-54-7d67a6586592> in <module>()
      1 rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
      ----> 2 rf = rf.fit(training_data[["followers_count","friends_count","NewCol","bot"]], training_data.bot)

      D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnensembleforest.py in fit(self, X, y, sample_weight)
      245 """
      246 # Validate or convert input data
      --> 247 X = check_array(X, accept_sparse="csc", dtype=DTYPE)
      248 y = check_array(y, accept_sparse='csc', ensure_2d=False, dtype=None)
      249 if sample_weight is not None:

      D:_MyFiles_LibrariesDocumentsAnaconda3libsite-packagessklearnutilsvalidation.py in check_array(array, accept_sparse, dtype, order, copy, force_all_finite, ensure_2d, allow_nd, ensure_min_samples, ensure_min_features, warn_on_dtype, estimator)
      431 force_all_finite)
      432 else:
      --> 433 array = np.array(array, dtype=dtype, order=order, copy=copy)
      434
      435 if ensure_2d:

      ValueError: setting an array element with a sequence.


      I did some debugging:



      print(type(training_data.NewCol))
      print(type(training_data.NewCol[0]))
      >>> <class 'pandas.core.series.Series'>
      >>> <class 'numpy.ndarray'>


      Any help would be appreciated.







      python scikit-learn classification text-classification countvectorizer






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Mar 20 at 20:56









      Tallen86Tallen86

      82




      82






















          1 Answer
          1






          active

          oldest

          votes


















          0














          I would do this the other way around and add your features to your vectorization. Here is what I mean with a toy example:



          from sklearn.feature_extraction.text import CountVectorizer
          from sklearn.ensemble import RandomForestClassifier
          import pandas as pd
          import numpy as np
          from scipy.sparse import hstack, csr_matrix


          Suppose now you have you features in a dataframe called df and your labels in y_train:



          df = pd.DataFrame("a":[1,2],"b":[2,3],"c":['we love cars', 'we love cakes'])
          y_train = np.array([0,1])


          You want to perform a text vectorization on column c and add the features a and b to your vectorization.



          vectorizer = CountVectorizer()
          CountVecTest = vectorizer.fit_transform(df.c)

          CountVecTest.toarray()


          This will return:



          array([[0, 1, 1, 1],
          [1, 0, 1, 1]], dtype=int64)


          But CountVecTest now is a scipy sparse matrix. So what you need to do is add your features to this matrix. Like this:



          X_train = hstack([CountVecTest, csr_matrix(df[['a','b']])])

          X_train.toarray()


          This will return, as expected:



          array([[0, 1, 1, 1, 1, 2],
          [1, 0, 1, 1, 2, 3]], dtype=int64)


          Then you can train your random forest:



          rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
          rf.fit(X_train, y_train)


          NB: In the code snippet you provided, you passed the label info (the "bot" column) to the training features, which you should obviously not do.






          share|improve this answer


















          • 1





            thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

            – Tallen86
            Mar 23 at 16:22











          • Glad it helped!

            – MaximeKan
            Mar 23 at 18:17











          Your Answer






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          1 Answer
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          1 Answer
          1






          active

          oldest

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          active

          oldest

          votes






          active

          oldest

          votes









          0














          I would do this the other way around and add your features to your vectorization. Here is what I mean with a toy example:



          from sklearn.feature_extraction.text import CountVectorizer
          from sklearn.ensemble import RandomForestClassifier
          import pandas as pd
          import numpy as np
          from scipy.sparse import hstack, csr_matrix


          Suppose now you have you features in a dataframe called df and your labels in y_train:



          df = pd.DataFrame("a":[1,2],"b":[2,3],"c":['we love cars', 'we love cakes'])
          y_train = np.array([0,1])


          You want to perform a text vectorization on column c and add the features a and b to your vectorization.



          vectorizer = CountVectorizer()
          CountVecTest = vectorizer.fit_transform(df.c)

          CountVecTest.toarray()


          This will return:



          array([[0, 1, 1, 1],
          [1, 0, 1, 1]], dtype=int64)


          But CountVecTest now is a scipy sparse matrix. So what you need to do is add your features to this matrix. Like this:



          X_train = hstack([CountVecTest, csr_matrix(df[['a','b']])])

          X_train.toarray()


          This will return, as expected:



          array([[0, 1, 1, 1, 1, 2],
          [1, 0, 1, 1, 2, 3]], dtype=int64)


          Then you can train your random forest:



          rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
          rf.fit(X_train, y_train)


          NB: In the code snippet you provided, you passed the label info (the "bot" column) to the training features, which you should obviously not do.






          share|improve this answer


















          • 1





            thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

            – Tallen86
            Mar 23 at 16:22











          • Glad it helped!

            – MaximeKan
            Mar 23 at 18:17















          0














          I would do this the other way around and add your features to your vectorization. Here is what I mean with a toy example:



          from sklearn.feature_extraction.text import CountVectorizer
          from sklearn.ensemble import RandomForestClassifier
          import pandas as pd
          import numpy as np
          from scipy.sparse import hstack, csr_matrix


          Suppose now you have you features in a dataframe called df and your labels in y_train:



          df = pd.DataFrame("a":[1,2],"b":[2,3],"c":['we love cars', 'we love cakes'])
          y_train = np.array([0,1])


          You want to perform a text vectorization on column c and add the features a and b to your vectorization.



          vectorizer = CountVectorizer()
          CountVecTest = vectorizer.fit_transform(df.c)

          CountVecTest.toarray()


          This will return:



          array([[0, 1, 1, 1],
          [1, 0, 1, 1]], dtype=int64)


          But CountVecTest now is a scipy sparse matrix. So what you need to do is add your features to this matrix. Like this:



          X_train = hstack([CountVecTest, csr_matrix(df[['a','b']])])

          X_train.toarray()


          This will return, as expected:



          array([[0, 1, 1, 1, 1, 2],
          [1, 0, 1, 1, 2, 3]], dtype=int64)


          Then you can train your random forest:



          rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
          rf.fit(X_train, y_train)


          NB: In the code snippet you provided, you passed the label info (the "bot" column) to the training features, which you should obviously not do.






          share|improve this answer


















          • 1





            thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

            – Tallen86
            Mar 23 at 16:22











          • Glad it helped!

            – MaximeKan
            Mar 23 at 18:17













          0












          0








          0







          I would do this the other way around and add your features to your vectorization. Here is what I mean with a toy example:



          from sklearn.feature_extraction.text import CountVectorizer
          from sklearn.ensemble import RandomForestClassifier
          import pandas as pd
          import numpy as np
          from scipy.sparse import hstack, csr_matrix


          Suppose now you have you features in a dataframe called df and your labels in y_train:



          df = pd.DataFrame("a":[1,2],"b":[2,3],"c":['we love cars', 'we love cakes'])
          y_train = np.array([0,1])


          You want to perform a text vectorization on column c and add the features a and b to your vectorization.



          vectorizer = CountVectorizer()
          CountVecTest = vectorizer.fit_transform(df.c)

          CountVecTest.toarray()


          This will return:



          array([[0, 1, 1, 1],
          [1, 0, 1, 1]], dtype=int64)


          But CountVecTest now is a scipy sparse matrix. So what you need to do is add your features to this matrix. Like this:



          X_train = hstack([CountVecTest, csr_matrix(df[['a','b']])])

          X_train.toarray()


          This will return, as expected:



          array([[0, 1, 1, 1, 1, 2],
          [1, 0, 1, 1, 2, 3]], dtype=int64)


          Then you can train your random forest:



          rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
          rf.fit(X_train, y_train)


          NB: In the code snippet you provided, you passed the label info (the "bot" column) to the training features, which you should obviously not do.






          share|improve this answer













          I would do this the other way around and add your features to your vectorization. Here is what I mean with a toy example:



          from sklearn.feature_extraction.text import CountVectorizer
          from sklearn.ensemble import RandomForestClassifier
          import pandas as pd
          import numpy as np
          from scipy.sparse import hstack, csr_matrix


          Suppose now you have you features in a dataframe called df and your labels in y_train:



          df = pd.DataFrame("a":[1,2],"b":[2,3],"c":['we love cars', 'we love cakes'])
          y_train = np.array([0,1])


          You want to perform a text vectorization on column c and add the features a and b to your vectorization.



          vectorizer = CountVectorizer()
          CountVecTest = vectorizer.fit_transform(df.c)

          CountVecTest.toarray()


          This will return:



          array([[0, 1, 1, 1],
          [1, 0, 1, 1]], dtype=int64)


          But CountVecTest now is a scipy sparse matrix. So what you need to do is add your features to this matrix. Like this:



          X_train = hstack([CountVecTest, csr_matrix(df[['a','b']])])

          X_train.toarray()


          This will return, as expected:



          array([[0, 1, 1, 1, 1, 2],
          [1, 0, 1, 1, 2, 3]], dtype=int64)


          Then you can train your random forest:



          rf = RandomForestClassifier(criterion='entropy', min_samples_leaf=10, min_samples_split=20)
          rf.fit(X_train, y_train)


          NB: In the code snippet you provided, you passed the label info (the "bot" column) to the training features, which you should obviously not do.







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Mar 22 at 1:46









          MaximeKanMaximeKan

          81426




          81426







          • 1





            thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

            – Tallen86
            Mar 23 at 16:22











          • Glad it helped!

            – MaximeKan
            Mar 23 at 18:17












          • 1





            thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

            – Tallen86
            Mar 23 at 16:22











          • Glad it helped!

            – MaximeKan
            Mar 23 at 18:17







          1




          1





          thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

          – Tallen86
          Mar 23 at 16:22





          thank you very much! Managed to get it working. also needed to cast the dataframe to int but everything else was spot on

          – Tallen86
          Mar 23 at 16:22













          Glad it helped!

          – MaximeKan
          Mar 23 at 18:17





          Glad it helped!

          – MaximeKan
          Mar 23 at 18:17



















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