importance sampling from posterior distribution in RImportance Sampling MC - a couple of questions regarding PDFReweighting importance-weighted samples in Bayesian bootstrapVariance of weighted importance sampling when random variables are boundedGeneral questions on rejection samplingBayesian importance sampling as an answer to a “paradox” by WassermanComparing two Importance Densities for Bayesian InferenceHow to use posterior density samples to infer unknown quantities/parameters?How can we use importance sampling for drawing posterior distribution samples?An approach to analyse error in ABC posteriorBayesian estimation by sampling the prior?
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importance sampling from posterior distribution in R
Importance Sampling MC - a couple of questions regarding PDFReweighting importance-weighted samples in Bayesian bootstrapVariance of weighted importance sampling when random variables are boundedGeneral questions on rejection samplingBayesian importance sampling as an answer to a “paradox” by WassermanComparing two Importance Densities for Bayesian InferenceHow to use posterior density samples to infer unknown quantities/parameters?How can we use importance sampling for drawing posterior distribution samples?An approach to analyse error in ABC posteriorBayesian estimation by sampling the prior?
$begingroup$
Today I read that Importance Sampling can be used to draw posterior distribution samples just like Rejection Sampling. However, my understanding of Importance Sampling is that its main purpose is to just compute expectations (ie. integrals) that would otherwise be hard to compute. How can Importance Sampling be used to draw posterior distribution samples from a Bayesian Model?
I only know the posterior positive ratio up to some constant, i.e., a constant term in the normalisation.
bayesian simulation monte-carlo posterior importance-sampling
$endgroup$
migrated from stackoverflow.com yesterday
This question came from our site for professional and enthusiast programmers.
add a comment |
$begingroup$
Today I read that Importance Sampling can be used to draw posterior distribution samples just like Rejection Sampling. However, my understanding of Importance Sampling is that its main purpose is to just compute expectations (ie. integrals) that would otherwise be hard to compute. How can Importance Sampling be used to draw posterior distribution samples from a Bayesian Model?
I only know the posterior positive ratio up to some constant, i.e., a constant term in the normalisation.
bayesian simulation monte-carlo posterior importance-sampling
$endgroup$
migrated from stackoverflow.com yesterday
This question came from our site for professional and enthusiast programmers.
add a comment |
$begingroup$
Today I read that Importance Sampling can be used to draw posterior distribution samples just like Rejection Sampling. However, my understanding of Importance Sampling is that its main purpose is to just compute expectations (ie. integrals) that would otherwise be hard to compute. How can Importance Sampling be used to draw posterior distribution samples from a Bayesian Model?
I only know the posterior positive ratio up to some constant, i.e., a constant term in the normalisation.
bayesian simulation monte-carlo posterior importance-sampling
$endgroup$
Today I read that Importance Sampling can be used to draw posterior distribution samples just like Rejection Sampling. However, my understanding of Importance Sampling is that its main purpose is to just compute expectations (ie. integrals) that would otherwise be hard to compute. How can Importance Sampling be used to draw posterior distribution samples from a Bayesian Model?
I only know the posterior positive ratio up to some constant, i.e., a constant term in the normalisation.
bayesian simulation monte-carlo posterior importance-sampling
bayesian simulation monte-carlo posterior importance-sampling
edited 20 hours ago
Xi'an
58.6k897363
58.6k897363
asked yesterday
陳寧寬陳寧寬
62
62
migrated from stackoverflow.com yesterday
This question came from our site for professional and enthusiast programmers.
migrated from stackoverflow.com yesterday
This question came from our site for professional and enthusiast programmers.
add a comment |
add a comment |
2 Answers
2
active
oldest
votes
$begingroup$
The boundary between estimating expectations and producing simulations is rather vague in the sense that, once given an importance sampling sample
$$(x_1,omega_1),ldots,(x_T,omega_T)qquadomega_t=f(x_t)/g(x_t)$$
estimating $mathbb E_f[h(X)]$ by $$frac1T,sum_t=1^T omega_t h(x_t)$$ and estimating the cdf $F(cdot)$ by$$hat F(x)=frac1T,sum_t=1^Tomega_t Bbb I_xle x_t$$ is of the same nature. Simulating from $hat F$ is easily done by inversion and is also the concept at the basis of weighted bootstrap.
In the case where the density $f$ is not properly normalised, as in most Bayesian settings, renormalising the $omega_t$'s by their sum is also a converging approximation.
$qquadqquad$
The field of particle filters and sequential Monte Carlo (SMC) is taking advantage of this principle to handle sequential targets and state-space models. As in the illustrations above and below:
$qquadqquad$
$endgroup$
add a comment |
$begingroup$
by using IS(importance sampling) you can calculate a expectation of posterior, that is enough to take prior as Importance distribution. to generate random sample from posterior, you should re-sampling from sample that generated from prior. you should use, SIR (sampling importance resampling).
SIR is a extended of IS that by using it you can draw sample from a posterior distribution
SIR
to generate $m$ sample from the posterior distribution,
$pi(theta|X) propto f(x|theta) pi(theta)$, follow this step:
step 1: draw $k$ i.i.d sample from $pi(theta)$,(k>m)
$theta_i _i=1^k overseti.i.dsim pi(theta)$
step 2
appoint weight
beginarrayc
theta & theta_1 & theta_2 & cdots & theta_k \ hline \
w & w_1=fractheta_1)theta_i)
& w_2= fractheta_2)theta_i)
& cdots
& w_k=fracp(xtheta_i)
endarray
now by sampling $theta_i _i=1^m$ (without replacement) form
$theta_i _i=1^k$ with probability $w_i _i=1^k$ , you can obtain random sample from posterior.
$endgroup$
add a comment |
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2 Answers
2
active
oldest
votes
2 Answers
2
active
oldest
votes
active
oldest
votes
active
oldest
votes
$begingroup$
The boundary between estimating expectations and producing simulations is rather vague in the sense that, once given an importance sampling sample
$$(x_1,omega_1),ldots,(x_T,omega_T)qquadomega_t=f(x_t)/g(x_t)$$
estimating $mathbb E_f[h(X)]$ by $$frac1T,sum_t=1^T omega_t h(x_t)$$ and estimating the cdf $F(cdot)$ by$$hat F(x)=frac1T,sum_t=1^Tomega_t Bbb I_xle x_t$$ is of the same nature. Simulating from $hat F$ is easily done by inversion and is also the concept at the basis of weighted bootstrap.
In the case where the density $f$ is not properly normalised, as in most Bayesian settings, renormalising the $omega_t$'s by their sum is also a converging approximation.
$qquadqquad$
The field of particle filters and sequential Monte Carlo (SMC) is taking advantage of this principle to handle sequential targets and state-space models. As in the illustrations above and below:
$qquadqquad$
$endgroup$
add a comment |
$begingroup$
The boundary between estimating expectations and producing simulations is rather vague in the sense that, once given an importance sampling sample
$$(x_1,omega_1),ldots,(x_T,omega_T)qquadomega_t=f(x_t)/g(x_t)$$
estimating $mathbb E_f[h(X)]$ by $$frac1T,sum_t=1^T omega_t h(x_t)$$ and estimating the cdf $F(cdot)$ by$$hat F(x)=frac1T,sum_t=1^Tomega_t Bbb I_xle x_t$$ is of the same nature. Simulating from $hat F$ is easily done by inversion and is also the concept at the basis of weighted bootstrap.
In the case where the density $f$ is not properly normalised, as in most Bayesian settings, renormalising the $omega_t$'s by their sum is also a converging approximation.
$qquadqquad$
The field of particle filters and sequential Monte Carlo (SMC) is taking advantage of this principle to handle sequential targets and state-space models. As in the illustrations above and below:
$qquadqquad$
$endgroup$
add a comment |
$begingroup$
The boundary between estimating expectations and producing simulations is rather vague in the sense that, once given an importance sampling sample
$$(x_1,omega_1),ldots,(x_T,omega_T)qquadomega_t=f(x_t)/g(x_t)$$
estimating $mathbb E_f[h(X)]$ by $$frac1T,sum_t=1^T omega_t h(x_t)$$ and estimating the cdf $F(cdot)$ by$$hat F(x)=frac1T,sum_t=1^Tomega_t Bbb I_xle x_t$$ is of the same nature. Simulating from $hat F$ is easily done by inversion and is also the concept at the basis of weighted bootstrap.
In the case where the density $f$ is not properly normalised, as in most Bayesian settings, renormalising the $omega_t$'s by their sum is also a converging approximation.
$qquadqquad$
The field of particle filters and sequential Monte Carlo (SMC) is taking advantage of this principle to handle sequential targets and state-space models. As in the illustrations above and below:
$qquadqquad$
$endgroup$
The boundary between estimating expectations and producing simulations is rather vague in the sense that, once given an importance sampling sample
$$(x_1,omega_1),ldots,(x_T,omega_T)qquadomega_t=f(x_t)/g(x_t)$$
estimating $mathbb E_f[h(X)]$ by $$frac1T,sum_t=1^T omega_t h(x_t)$$ and estimating the cdf $F(cdot)$ by$$hat F(x)=frac1T,sum_t=1^Tomega_t Bbb I_xle x_t$$ is of the same nature. Simulating from $hat F$ is easily done by inversion and is also the concept at the basis of weighted bootstrap.
In the case where the density $f$ is not properly normalised, as in most Bayesian settings, renormalising the $omega_t$'s by their sum is also a converging approximation.
$qquadqquad$
The field of particle filters and sequential Monte Carlo (SMC) is taking advantage of this principle to handle sequential targets and state-space models. As in the illustrations above and below:
$qquadqquad$
edited 20 hours ago
answered 23 hours ago
Xi'anXi'an
58.6k897363
58.6k897363
add a comment |
add a comment |
$begingroup$
by using IS(importance sampling) you can calculate a expectation of posterior, that is enough to take prior as Importance distribution. to generate random sample from posterior, you should re-sampling from sample that generated from prior. you should use, SIR (sampling importance resampling).
SIR is a extended of IS that by using it you can draw sample from a posterior distribution
SIR
to generate $m$ sample from the posterior distribution,
$pi(theta|X) propto f(x|theta) pi(theta)$, follow this step:
step 1: draw $k$ i.i.d sample from $pi(theta)$,(k>m)
$theta_i _i=1^k overseti.i.dsim pi(theta)$
step 2
appoint weight
beginarrayc
theta & theta_1 & theta_2 & cdots & theta_k \ hline \
w & w_1=fractheta_1)theta_i)
& w_2= fractheta_2)theta_i)
& cdots
& w_k=fracp(xtheta_i)
endarray
now by sampling $theta_i _i=1^m$ (without replacement) form
$theta_i _i=1^k$ with probability $w_i _i=1^k$ , you can obtain random sample from posterior.
$endgroup$
add a comment |
$begingroup$
by using IS(importance sampling) you can calculate a expectation of posterior, that is enough to take prior as Importance distribution. to generate random sample from posterior, you should re-sampling from sample that generated from prior. you should use, SIR (sampling importance resampling).
SIR is a extended of IS that by using it you can draw sample from a posterior distribution
SIR
to generate $m$ sample from the posterior distribution,
$pi(theta|X) propto f(x|theta) pi(theta)$, follow this step:
step 1: draw $k$ i.i.d sample from $pi(theta)$,(k>m)
$theta_i _i=1^k overseti.i.dsim pi(theta)$
step 2
appoint weight
beginarrayc
theta & theta_1 & theta_2 & cdots & theta_k \ hline \
w & w_1=fractheta_1)theta_i)
& w_2= fractheta_2)theta_i)
& cdots
& w_k=fracp(xtheta_i)
endarray
now by sampling $theta_i _i=1^m$ (without replacement) form
$theta_i _i=1^k$ with probability $w_i _i=1^k$ , you can obtain random sample from posterior.
$endgroup$
add a comment |
$begingroup$
by using IS(importance sampling) you can calculate a expectation of posterior, that is enough to take prior as Importance distribution. to generate random sample from posterior, you should re-sampling from sample that generated from prior. you should use, SIR (sampling importance resampling).
SIR is a extended of IS that by using it you can draw sample from a posterior distribution
SIR
to generate $m$ sample from the posterior distribution,
$pi(theta|X) propto f(x|theta) pi(theta)$, follow this step:
step 1: draw $k$ i.i.d sample from $pi(theta)$,(k>m)
$theta_i _i=1^k overseti.i.dsim pi(theta)$
step 2
appoint weight
beginarrayc
theta & theta_1 & theta_2 & cdots & theta_k \ hline \
w & w_1=fractheta_1)theta_i)
& w_2= fractheta_2)theta_i)
& cdots
& w_k=fracp(xtheta_i)
endarray
now by sampling $theta_i _i=1^m$ (without replacement) form
$theta_i _i=1^k$ with probability $w_i _i=1^k$ , you can obtain random sample from posterior.
$endgroup$
by using IS(importance sampling) you can calculate a expectation of posterior, that is enough to take prior as Importance distribution. to generate random sample from posterior, you should re-sampling from sample that generated from prior. you should use, SIR (sampling importance resampling).
SIR is a extended of IS that by using it you can draw sample from a posterior distribution
SIR
to generate $m$ sample from the posterior distribution,
$pi(theta|X) propto f(x|theta) pi(theta)$, follow this step:
step 1: draw $k$ i.i.d sample from $pi(theta)$,(k>m)
$theta_i _i=1^k overseti.i.dsim pi(theta)$
step 2
appoint weight
beginarrayc
theta & theta_1 & theta_2 & cdots & theta_k \ hline \
w & w_1=fractheta_1)theta_i)
& w_2= fractheta_2)theta_i)
& cdots
& w_k=fracp(xtheta_i)
endarray
now by sampling $theta_i _i=1^m$ (without replacement) form
$theta_i _i=1^k$ with probability $w_i _i=1^k$ , you can obtain random sample from posterior.
answered 18 hours ago
masoudmasoud
655
655
add a comment |
add a comment |
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