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Troubleshooting of running command for Homer Motif analysis in Terminal in Mac
Text tagging/analysis tool for MacMerging Data to Run Specific Individual AnalysisSummation Run Time algorithm analysisSummation Run Time AnalysisEclipse SonarQube plugin: run analysis on new projectSonarQube Eclipse plugin analysis fails because plugin points to wrong .jar fileRunning Time Analysis for Iterative sorting algorithmAnalysis of Running TimesGradle build is not happening while trying to implement analysis using Sonarqube
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I am getting this error while doing motif analysis in Homer in my Mac:-
"bash: findMotifs.pl: command not found"
I have followed the following steps:
- I created a folder called Homer where i kept the ConfigureHomer.pl script
- Then I went to the homer directory by cd homer command in terminal
- Then I install homer via command:
pearl/ConfigureHomer.pl-install
then i set the path
asPATH=$PATH:/my_directory/homer/.//bin/ - Then I install mouse promoter as:
perl /my _directory/homer/.//configureHomer.pl -install mouseperl /my _directory/homer/.//configureHomer.pl -install mouse-o - And then I install the mouse genome version mm10 as:
perl /my _directory/homer/.//configureHomer.pl -install mm10 - Then for checking whether it is working well I type:
findMotifs.pl
But I get the error as:
bash: findMotifs.pl: command not found
analysis
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
add a comment |
I am getting this error while doing motif analysis in Homer in my Mac:-
"bash: findMotifs.pl: command not found"
I have followed the following steps:
- I created a folder called Homer where i kept the ConfigureHomer.pl script
- Then I went to the homer directory by cd homer command in terminal
- Then I install homer via command:
pearl/ConfigureHomer.pl-install
then i set the path
asPATH=$PATH:/my_directory/homer/.//bin/ - Then I install mouse promoter as:
perl /my _directory/homer/.//configureHomer.pl -install mouseperl /my _directory/homer/.//configureHomer.pl -install mouse-o - And then I install the mouse genome version mm10 as:
perl /my _directory/homer/.//configureHomer.pl -install mm10 - Then for checking whether it is working well I type:
findMotifs.pl
But I get the error as:
bash: findMotifs.pl: command not found
analysis
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
add a comment |
I am getting this error while doing motif analysis in Homer in my Mac:-
"bash: findMotifs.pl: command not found"
I have followed the following steps:
- I created a folder called Homer where i kept the ConfigureHomer.pl script
- Then I went to the homer directory by cd homer command in terminal
- Then I install homer via command:
pearl/ConfigureHomer.pl-install
then i set the path
asPATH=$PATH:/my_directory/homer/.//bin/ - Then I install mouse promoter as:
perl /my _directory/homer/.//configureHomer.pl -install mouseperl /my _directory/homer/.//configureHomer.pl -install mouse-o - And then I install the mouse genome version mm10 as:
perl /my _directory/homer/.//configureHomer.pl -install mm10 - Then for checking whether it is working well I type:
findMotifs.pl
But I get the error as:
bash: findMotifs.pl: command not found
analysis
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
I am getting this error while doing motif analysis in Homer in my Mac:-
"bash: findMotifs.pl: command not found"
I have followed the following steps:
- I created a folder called Homer where i kept the ConfigureHomer.pl script
- Then I went to the homer directory by cd homer command in terminal
- Then I install homer via command:
pearl/ConfigureHomer.pl-install
then i set the path
asPATH=$PATH:/my_directory/homer/.//bin/ - Then I install mouse promoter as:
perl /my _directory/homer/.//configureHomer.pl -install mouseperl /my _directory/homer/.//configureHomer.pl -install mouse-o - And then I install the mouse genome version mm10 as:
perl /my _directory/homer/.//configureHomer.pl -install mm10 - Then for checking whether it is working well I type:
findMotifs.pl
But I get the error as:
bash: findMotifs.pl: command not found
analysis
analysis
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
edited May 13 at 7:41
FrodeTennebo
4193 silver badges12 bronze badges
4193 silver badges12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
asked Mar 27 at 6:37
Manti Kumar SahaManti Kumar Saha
12 bronze badges
12 bronze badges
add a comment |
add a comment |
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