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Running into input/output error when saving tensorflow session checkpoint (on google colab)


How to use tornado coroutines in this case?InvalidArgumentError: for tensor bool tensorflow==0.12.1Tensorflow - You must feed a value for placeholder tensor 'X' with dtype floatTensorflow trained model works on cloud machine but gives an error when used in my local pcTensorflow implementing crf lossInput tensors to a Model must come from `tf.layers.Input` when I concatenate two models with Keras API on TensorflowError executing rnn model . How to fix it?Using elmo to extract features from text






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty
margin-bottom:0;









1















First off, here is the error:



UnknownError (see above for traceback): drive/Colab Notebooks/saved_model/model1.ckpt-313.data-00000-of-00001.tempstate7585627669875003657; Input/output error
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]


I thought it could be due to diskspace but I have 332.38 GB available so that can't be it.



I'm not sure what other pieces would cause this but if any other details are needed, please ask and I'll update my post.



[Full Error]



 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
 self._run_callback(callback, msg)
 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
 callback(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tornado/stack_context.py", line 277, in null_wrapper
 return fn(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 283, in dispatcher
 return self.dispatch_shell(stream, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 235, in dispatch_shell
 handler(stream, idents, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 399, in execute_request
 user_expressions, allow_stdin)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/ipkernel.py", line 196, in do_execute
 res = shell.run_cell(code, store_history=store_history, silent=silent)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/zmqshell.py", line 533, in run_cell
 return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2718, in run_cell
 interactivity=interactivity, compiler=compiler, result=result)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2822, in run_ast_nodes
 if self.run_code(code, result):
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2882, in run_code
 exec(code_obj, self.user_global_ns, self.user_ns)
 File "<ipython-input-48-1ef727974922>", line 66, in <module>
 saver = tf.train.Saver(tf.global_variables())
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 832, in __init__
 self.build()
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 844, in build
 self._build(self._filename, build_save=True, build_restore=True)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 881, in _build
 build_save=build_save, build_restore=build_restore)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 510, in _build_internal
 save_tensor = self._AddSaveOps(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 210, in _AddSaveOps
 save = self.save_op(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 124, in save_op
 tensors)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/ops/gen_io_ops.py", line 1807, in save_v2
 name=name)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
 return func(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 1801, in __init__
 self._traceback = tf_stack.extract_stack()





python tensorflow google-colaboratory







share|improve this question


























  • Can u put traceback from above the error you posted here?

    – VladoDemcak
    Mar 28 at 21:11











  • Added what I could!

    – madsthaks
    Mar 29 at 20:14











  • What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

    – VladoDemcak
    Mar 30 at 9:05












  • You're correct. Its GPU,Python 3

    – madsthaks
    Mar 31 at 16:02

















1















First off, here is the error:



UnknownError (see above for traceback): drive/Colab Notebooks/saved_model/model1.ckpt-313.data-00000-of-00001.tempstate7585627669875003657; Input/output error
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]


I thought it could be due to diskspace but I have 332.38 GB available so that can't be it.



I'm not sure what other pieces would cause this but if any other details are needed, please ask and I'll update my post.



[Full Error]



 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
 self._run_callback(callback, msg)
 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
 callback(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tornado/stack_context.py", line 277, in null_wrapper
 return fn(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 283, in dispatcher
 return self.dispatch_shell(stream, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 235, in dispatch_shell
 handler(stream, idents, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 399, in execute_request
 user_expressions, allow_stdin)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/ipkernel.py", line 196, in do_execute
 res = shell.run_cell(code, store_history=store_history, silent=silent)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/zmqshell.py", line 533, in run_cell
 return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2718, in run_cell
 interactivity=interactivity, compiler=compiler, result=result)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2822, in run_ast_nodes
 if self.run_code(code, result):
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2882, in run_code
 exec(code_obj, self.user_global_ns, self.user_ns)
 File "<ipython-input-48-1ef727974922>", line 66, in <module>
 saver = tf.train.Saver(tf.global_variables())
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 832, in __init__
 self.build()
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 844, in build
 self._build(self._filename, build_save=True, build_restore=True)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 881, in _build
 build_save=build_save, build_restore=build_restore)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 510, in _build_internal
 save_tensor = self._AddSaveOps(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 210, in _AddSaveOps
 save = self.save_op(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 124, in save_op
 tensors)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/ops/gen_io_ops.py", line 1807, in save_v2
 name=name)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
 return func(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 1801, in __init__
 self._traceback = tf_stack.extract_stack()





python tensorflow google-colaboratory







share|improve this question


























  • Can u put traceback from above the error you posted here?

    – VladoDemcak
    Mar 28 at 21:11











  • Added what I could!

    – madsthaks
    Mar 29 at 20:14











  • What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

    – VladoDemcak
    Mar 30 at 9:05












  • You're correct. Its GPU,Python 3

    – madsthaks
    Mar 31 at 16:02













1












1








1








First off, here is the error:



UnknownError (see above for traceback): drive/Colab Notebooks/saved_model/model1.ckpt-313.data-00000-of-00001.tempstate7585627669875003657; Input/output error
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]


I thought it could be due to diskspace but I have 332.38 GB available so that can't be it.



I'm not sure what other pieces would cause this but if any other details are needed, please ask and I'll update my post.



[Full Error]



 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
 self._run_callback(callback, msg)
 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
 callback(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tornado/stack_context.py", line 277, in null_wrapper
 return fn(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 283, in dispatcher
 return self.dispatch_shell(stream, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 235, in dispatch_shell
 handler(stream, idents, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 399, in execute_request
 user_expressions, allow_stdin)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/ipkernel.py", line 196, in do_execute
 res = shell.run_cell(code, store_history=store_history, silent=silent)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/zmqshell.py", line 533, in run_cell
 return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2718, in run_cell
 interactivity=interactivity, compiler=compiler, result=result)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2822, in run_ast_nodes
 if self.run_code(code, result):
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2882, in run_code
 exec(code_obj, self.user_global_ns, self.user_ns)
 File "<ipython-input-48-1ef727974922>", line 66, in <module>
 saver = tf.train.Saver(tf.global_variables())
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 832, in __init__
 self.build()
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 844, in build
 self._build(self._filename, build_save=True, build_restore=True)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 881, in _build
 build_save=build_save, build_restore=build_restore)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 510, in _build_internal
 save_tensor = self._AddSaveOps(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 210, in _AddSaveOps
 save = self.save_op(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 124, in save_op
 tensors)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/ops/gen_io_ops.py", line 1807, in save_v2
 name=name)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
 return func(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 1801, in __init__
 self._traceback = tf_stack.extract_stack()





python tensorflow google-colaboratory







share|improve this question
















First off, here is the error:



UnknownError (see above for traceback): drive/Colab Notebooks/saved_model/model1.ckpt-313.data-00000-of-00001.tempstate7585627669875003657; Input/output error
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]
 [[node save_2/SaveV2 (defined at <ipython-input-48-1ef727974922>:66) ]]


I thought it could be due to diskspace but I have 332.38 GB available so that can't be it.



I'm not sure what other pieces would cause this but if any other details are needed, please ask and I'll update my post.



[Full Error]



 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
 self._run_callback(callback, msg)
 File "/usr/local/lib/python3.6/dist-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
 callback(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tornado/stack_context.py", line 277, in null_wrapper
 return fn(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 283, in dispatcher
 return self.dispatch_shell(stream, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 235, in dispatch_shell
 handler(stream, idents, msg)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/kernelbase.py", line 399, in execute_request
 user_expressions, allow_stdin)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/ipkernel.py", line 196, in do_execute
 res = shell.run_cell(code, store_history=store_history, silent=silent)
 File "/usr/local/lib/python3.6/dist-packages/ipykernel/zmqshell.py", line 533, in run_cell
 return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2718, in run_cell
 interactivity=interactivity, compiler=compiler, result=result)
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2822, in run_ast_nodes
 if self.run_code(code, result):
 File "/usr/local/lib/python3.6/dist-packages/IPython/core/interactiveshell.py", line 2882, in run_code
 exec(code_obj, self.user_global_ns, self.user_ns)
 File "<ipython-input-48-1ef727974922>", line 66, in <module>
 saver = tf.train.Saver(tf.global_variables())
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 832, in __init__
 self.build()
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 844, in build
 self._build(self._filename, build_save=True, build_restore=True)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 881, in _build
 build_save=build_save, build_restore=build_restore)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 510, in _build_internal
 save_tensor = self._AddSaveOps(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 210, in _AddSaveOps
 save = self.save_op(filename_tensor, saveables)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/training/saver.py", line 124, in save_op
 tensors)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/ops/gen_io_ops.py", line 1807, in save_v2
 name=name)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
 return func(*args, **kwargs)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
 op_def=op_def)
 File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 1801, in __init__
 self._traceback = tf_stack.extract_stack()





python tensorflow google-colaboratory




python tensorflow google-colaboratory






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Mar 29 at 20:14







madsthaks

















asked Mar 28 at 20:37









madsthaksmadsthaks

8262 gold badges9 silver badges25 bronze badges




8262 gold badges9 silver badges25 bronze badges















  • Can u put traceback from above the error you posted here?

    – VladoDemcak
    Mar 28 at 21:11











  • Added what I could!

    – madsthaks
    Mar 29 at 20:14











  • What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

    – VladoDemcak
    Mar 30 at 9:05












  • You're correct. Its GPU,Python 3

    – madsthaks
    Mar 31 at 16:02

















  • Can u put traceback from above the error you posted here?

    – VladoDemcak
    Mar 28 at 21:11











  • Added what I could!

    – madsthaks
    Mar 29 at 20:14











  • What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

    – VladoDemcak
    Mar 30 at 9:05












  • You're correct. Its GPU,Python 3

    – madsthaks
    Mar 31 at 16:02
















Can u put traceback from above the error you posted here?

– VladoDemcak
Mar 28 at 21:11





Can u put traceback from above the error you posted here?

– VladoDemcak
Mar 28 at 21:11













Added what I could!

– madsthaks
Mar 29 at 20:14





Added what I could!

– madsthaks
Mar 29 at 20:14













What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

– VladoDemcak
Mar 30 at 9:05






What is your HW Accelerator in Runtime type ? Based on tag google-colab I assume you run this on google colab.

– VladoDemcak
Mar 30 at 9:05














You're correct. Its GPU,Python 3

– madsthaks
Mar 31 at 16:02





You're correct. Its GPU,Python 3

– madsthaks
Mar 31 at 16:02












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