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Where should I search for the installed R packages by conda?
What is the difference between pip and conda?Trouble Installing geoR packagepackage ‘pbkrtest’ is not available (for R version 3.2.2)conda install fails even i found the package by conda info packageRCDK package installation fails in R studioInstall udunits2 package for R3.3R from anaconda / Jupyter notebook doesn't work anymoreError after installing packageInstalling GPU R packages on UbuntuWhy installed “igraph” package in R is showing error upon loading?
.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;
I am installing r packages using conda. It works fine when I use this example format
"conda install -c r r-scales --name condaenv"
But when I want to define installtion directory using --prefix
conda install -c r r-scales --prefix=/opt/local
the package "scale" is installed but I cannot find it in the directory I expect to be
"/opt/local/lib/R/library"
. It is weird because when I try to reinstall this package it says
All requested packages already installed.
that means this package is already installed in defined path. BUT WHERE?
I also try using
conda list
But I cannot find "scales" among installed packages.
UPDATE:
I also tried to use install.packages("scales), but I ran into this error
/opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm
collect2: error: ld returned 1 exit status make: ***
[/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error
1 ERROR: compilation failed for package ?scales?
* removing ?/raid60/raid2/opt/local/lib/R/library/scales?
r conda
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
add a comment |
I am installing r packages using conda. It works fine when I use this example format
"conda install -c r r-scales --name condaenv"
But when I want to define installtion directory using --prefix
conda install -c r r-scales --prefix=/opt/local
the package "scale" is installed but I cannot find it in the directory I expect to be
"/opt/local/lib/R/library"
. It is weird because when I try to reinstall this package it says
All requested packages already installed.
that means this package is already installed in defined path. BUT WHERE?
I also try using
conda list
But I cannot find "scales" among installed packages.
UPDATE:
I also tried to use install.packages("scales), but I ran into this error
/opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm
collect2: error: ld returned 1 exit status make: ***
[/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error
1 ERROR: compilation failed for package ?scales?
* removing ?/raid60/raid2/opt/local/lib/R/library/scales?
r conda
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33
add a comment |
I am installing r packages using conda. It works fine when I use this example format
"conda install -c r r-scales --name condaenv"
But when I want to define installtion directory using --prefix
conda install -c r r-scales --prefix=/opt/local
the package "scale" is installed but I cannot find it in the directory I expect to be
"/opt/local/lib/R/library"
. It is weird because when I try to reinstall this package it says
All requested packages already installed.
that means this package is already installed in defined path. BUT WHERE?
I also try using
conda list
But I cannot find "scales" among installed packages.
UPDATE:
I also tried to use install.packages("scales), but I ran into this error
/opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm
collect2: error: ld returned 1 exit status make: ***
[/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error
1 ERROR: compilation failed for package ?scales?
* removing ?/raid60/raid2/opt/local/lib/R/library/scales?
r conda
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
I am installing r packages using conda. It works fine when I use this example format
"conda install -c r r-scales --name condaenv"
But when I want to define installtion directory using --prefix
conda install -c r r-scales --prefix=/opt/local
the package "scale" is installed but I cannot find it in the directory I expect to be
"/opt/local/lib/R/library"
. It is weird because when I try to reinstall this package it says
All requested packages already installed.
that means this package is already installed in defined path. BUT WHERE?
I also try using
conda list
But I cannot find "scales" among installed packages.
UPDATE:
I also tried to use install.packages("scales), but I ran into this error
/opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm
collect2: error: ld returned 1 exit status make: ***
[/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error
1 ERROR: compilation failed for package ?scales?
* removing ?/raid60/raid2/opt/local/lib/R/library/scales?
r conda
r conda
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
edited Mar 27 at 10:33
Seyed Omid Nabavi
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
asked Mar 27 at 10:18
Seyed Omid NabaviSeyed Omid Nabavi
438 bronze badges
438 bronze badges
Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33
add a comment |
Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33
Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33
add a comment |
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Why not just installing R as is without conda?
– David Arenburg
Mar 27 at 10:23
Because I have consistently got an error, not only for this package but for many others. I also asked admin to fix it but he did not manage to. That is the error /opt/anaconda/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lm collect2: error: ld returned 1 exit status make: *** [/raid60/raid2/opt/local/lib/R/share/make/shlib.mk:6: scales.so] Error 1 ERROR: compilation failed for package ?scales? * removing ?/raid60/raid2/opt/local/lib/R/library/scales?
– Seyed Omid Nabavi
Mar 27 at 10:30
That's an conda error. I'm asking why using conda in the first place.
– David Arenburg
Mar 27 at 10:32
Sorry, is not it your question "why did not you use install.packages("scales)?" I did, but I got that error.
– Seyed Omid Nabavi
Mar 27 at 10:35
Yes, this is what happens when you install conda- it takes over your environment variables and makes you completely depended on it. It is worse than a virus. If I were you, I would uninstall conda and just install R without it.
– David Arenburg
Mar 27 at 11:33